Package: gemtc 0.8-4

gemtc: Network Meta-Analysis Using Bayesian Methods

Network meta-analyses (mixed treatment comparisons) in the Bayesian framework using JAGS. Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations.

Authors:Gert van Valkenhoef, Joel Kuiper

gemtc_0.8-4.tar.gz
gemtc_0.8-4.zip(r-4.5)gemtc_0.8-4.zip(r-4.4)gemtc_0.8-4.zip(r-4.3)
gemtc_0.8-4.tgz(r-4.4-x86_64)gemtc_0.8-4.tgz(r-4.4-arm64)gemtc_0.8-4.tgz(r-4.3-x86_64)gemtc_0.8-4.tgz(r-4.3-arm64)
gemtc_0.8-4.tar.gz(r-4.5-noble)gemtc_0.8-4.tar.gz(r-4.4-noble)
gemtc_0.8-4.tgz(r-4.4-emscripten)gemtc_0.8-4.tgz(r-4.3-emscripten)
gemtc.pdf |gemtc.html✨
gemtc/json (API)
NEWS

# Install 'gemtc' in R:

install.packages('gemtc', repos = c('https://gertvv.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gertvv/gemtc/issues

Uses libs:

jags– Just Another Gibbs Sampler for Bayesian MCMC
c++– GNU Standard C++ Library v3

Datasets:

atrialFibrillation - Prevention of stroke in atrial fibrillation patients
blocker - Beta blockers to prevent mortality after myocardial infarction
certolizumab - Certolizumab Pegol (CZP) for Rheumatoid Arthritis
depression - Treatment response in major depression
dietfat - Effects of low-fat diets on mortality
hfPrevention - Statins versus placebo in primary and secondary prevention of heart failure
parkinson - Mean off-time reduction in Parkinson's disease
parkinson_diff - Mean off-time reduction in Parkinson's disease
parkinson_shared - Mean off-time reduction in Parkinson's disease
smoking - Psychological treatments to aid smoking cessation
thrombolytic - Thrombolytic treatment after acute myocardial infarction

On CRAN:

22 exports 43 stars 6.52 score 55 dependencies 1 dependents 123 mentions 67 scripts 1.9k downloads

Last updated 4 years agofrom:b94d86a304. Checks:OK: 1 ERROR: 8. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 08 2024
R-4.5-win-x86_64	ERROR	Sep 08 2024
R-4.5-linux-x86_64	ERROR	Sep 08 2024
R-4.4-win-x86_64	ERROR	Sep 08 2024
R-4.4-mac-x86_64	ERROR	Sep 08 2024
R-4.4-mac-aarch64	ERROR	Sep 08 2024
R-4.3-win-x86_64	ERROR	Sep 08 2024
R-4.3-mac-x86_64	ERROR	Sep 08 2024
R-4.3-mac-aarch64	ERROR	Sep 08 2024

Exports:blobbogram forest ll.call mtc.anohe mtc.data.studyrow mtc.deviance mtc.devplot mtc.hy.empirical.lor mtc.hy.prior mtc.levplot mtc.model mtc.network mtc.nodesplit mtc.nodesplit.comparisons mtc.run plotCovariateEffect rank.probability rank.quantiles read.mtc.network relative.effect relative.effect.table sucra

Dependencies:bit bit64 boot cli clipr coda CompQuadForm cpp11 crayon dplyr fansi generics glue hms igraph lattice lifecycle lme4 magrittr MASS mathjaxr Matrix meta metadat metafor minqa nlme nloptr numDeriv pbapply pillar pkgconfig plyr prettyunits progress purrr R6 Rcpp RcppEigen readr Rglpk rjags rlang slam stringi stringr tibble tidyselect truncnorm tzdb utf8 vctrs vroom withr xml2

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GeMTC: Network meta-analysis in R	gemtc-package gemtc mtc
Prevention of stroke in atrial fibrillation patients	atrialFibrillation
Plot a blobbogram (AKA forest plot)	blobbogram forest
Beta blockers to prevent mortality after myocardial infarction	blocker
Certolizumab Pegol (CZP) for Rheumatoid Arthritis	certolizumab
Treatment response in major depression	depression
Effects of low-fat diets on mortality	dietfat
Statins versus placebo in primary and secondary prevention of heart failure	hfPrevention
Call a likelihood/link-specific function	ll.call
Analysis of heterogeneity (ANOHE)	mtc.anohe plot.mtc.anohe plot.mtc.anohe.summary print.mtc.anohe print.mtc.anohe.summary summary.mtc.anohe
Convert one-study-per-row datasets	mtc.data.studyrow
Inspect residual deviance	mtc.deviance mtc.devplot mtc.levplot plot.mtc.deviance
Set priors for the heterogeneity parameter	mtc.hy.empirical.lor mtc.hy.prior
Generate network meta-analysis models	mtc.model plot.mtc.model print.mtc.model summary.mtc.model
Create an mtc.network	mtc.network plot.mtc.network
Node-splitting analysis of inconsistency	mtc.nodesplit mtc.nodesplit.comparisons plot.mtc.nodesplit plot.mtc.nodesplit.summary print.mtc.nodesplit print.mtc.nodesplit.summary summary.mtc.nodesplit
Running an 'mtc.model' using an MCMC sampler	as.mcmc.list.mtc.result forest.mtc.result mtc.result mtc.run plot.mtc.result print.mtc.result summary.mtc.result
Mean off-time reduction in Parkinson's disease	parkinson parkinson_diff parkinson_shared
Plot treatment effects versus covariate values	plotCovariateEffect
Calculating rank-probabilities	plot.mtc.rank.probability print.mtc.rank.probability rank.probability rank.quantiles sucra
Read mtc.network from legacy GeMTC XML files (.gemtc)	read.mtc.network
Calculating relative effects	relative.effect
Table of relative effects	as.data.frame.mtc.relative.effect.table forest.mtc.relative.effect.table print.mtc.relative.effect.table relative.effect.table
Psychological treatments to aid smoking cessation	smoking
Thrombolytic treatment after acute myocardial infarction	thrombolytic